Skip to contents

Read dummy Phecode definitions file into R

Source: R/dummy.R
read_phecode_lkp_dummy.Rd

Reads a dummy Phecode definitions 1.2 csv file into R (full version may be downloaded from phewascatalog.org)

Usage

read_phecode_lkp_dummy()

Value

A data frame.

See also

Other Dummy data: build_all_lkps_maps_dummy(), dummy_all_lkps_maps_db(), dummy_clinical_events_tidy(), dummy_icd10_phecode_map_path(), dummy_phecode_lkp_path(), dummy_ukb_codings_path(), read_all_lkps_maps_dummy(), read_icd10_phecode_map_dummy(), read_ukb_codings_dummy()

Examples

read_phecode_lkp_dummy()
#> # A tibble: 33 × 8
#>    phecode phenotype    phecode_exclude_range sex   rollup leaf  category_number
#>    <chr>   <chr>        <chr>                 <chr> <chr>  <chr> <chr>          
#>  1 10      Tuberculosis 010-041.99            NA    1      1     1              
#>  2 249     Secondary d… 249-250.99            NA    1      1     3              
#>  3 250     Diabetes me… 249-250.99            Both  1      0     3              
#>  4 250.1   Type 1 diab… 249-250.99            Both  1      0     3              
#>  5 250.11  Type 1 diab… 249-250.99            Both  1      1     3              
#>  6 250.12  Type 1 diab… 249-250.99            Both  1      1     3              
#>  7 250.13  Type 1 diab… 249-250.99            Both  1      1     3              
#>  8 250.14  Type 1 diab… 249-250.99            Both  1      1     3              
#>  9 250.15  Diabetes ty… 249-250.99            Both  1      1     3              
#> 10 250.2   Type 2 diab… 249-250.99            Both  1      0     3              
#> # ℹ 23 more rows
#> # ℹ 1 more variable: category <chr>